Using the extractor script

Step-wise Process for Setting Up the Script for Extractor Experiments

1. Select the Type of Experiment

• Decide whether to run a Chemostat or Turbidostat experiment.

• Ensure you choose the correct type when configuring the script.

2. Set Parameters for the Experiment

• The setup process for Chemostat and Turbidostat is identical to non-extractor versions.

• Define the operational parameters as you normally would for the chosen type of experiment.

3. Specify Extractor and Non-Extractor Vials

• Identify which vials will be used as extractor and non-extractor vials:

  • Common Extractor Vials: 4, 5, 6, 7, 12, 13, 14, and 15.

  • Common Non-Extractor Vials: 0, 1, 2, 3, 8, 9, 10, and 11.

• Edit the script to assign these roles to the corresponding vials.

Extractor setting in script

4. Edit Vial Assignments if Needed

• If the vial assignments need to be changed during the experiment:

  • Modify the script accordingly.

  • Ensure all changes are accurately reflected in the script.

5. Restart the Script After Changes

• If any changes are made to the extractor or non-extractor vial assignments:

  • Stop the current running script.

  • Restart the updated script in the terminal to apply the changes.

6. Run the Experiment

• Once the script is set up with the correct parameters and vial assignments:

  • Start running the experiment using the script.

7. Monitor and Adjust as Necessary

• During the experiment, monitor the setup to ensure everything functions as expected.

• If adjustments are needed, repeat the steps to edit the script and restart it.