The following are different from the base eVOLVER setup:
Fluidics construction
Vial caps (get parts for at least two sets)
Bubbler cleaning apparatus (highly recommended)
We pause stirring and phototroph growth lights when we take OD. Without this, OD would be nonfunctional. Stirring causes bubbles be pulled downwards and the growth lights completely saturate the OD sensor.
Switch to calibration conf.yml before doing calibration
Because this will give us data every 20 seconds and greatly speed up calibration
Settings during calibration should mimic the experiment therefore:
Phototroph growth lights off
Stirring off
Vial setup for calibration (also mimic the experiment)
Prepare standards in caps with a bubbler
Use long stir bars
When moving standards, give a swirl once every other time
This is to make sure cells don’t settle and change the OD
Finally, switch back to experiment conf.yml when ready for experiment